Package: Sibyl 1.0

Sibyl: Sibyl

The Sibyl package provides a convenient way of testing a range of thresholds for rarefation, evaluating the effect of different values on ordination results, integrating with commonly used packages in microbial ecology. You provide phyloseq data with count data and sample information.

Authors:Lorenzo Assentato [aut, cre], Magdalena Polder [aut]

Sibyl_1.0.tar.gz
Sibyl_1.0.zip(r-4.7-any)Sibyl_1.0.zip(r-4.6-any)Sibyl_1.0.zip(r-4.5-any)
Sibyl_1.0.tgz(r-4.6-any)Sibyl_1.0.tgz(r-4.5-any)
Sibyl_1.0.tar.gz(r-4.7-any)Sibyl_1.0.tar.gz(r-4.6-any)
Sibyl_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Sibyl/json (API)

# Install 'Sibyl' in R:
install.packages('Sibyl', repos = c('https://headonpillow.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/headonpillow/sibyl/issues

Pkgdown/docs site:https://headonpillow.github.io

Datasets:

On CRAN:

Conda:

amplicon-sequencingmicrobial-ecologynormalizationrarefaction

2.88 score 2 stars 15 scripts 5 exports 100 dependencies

Last updated from:af8f183b3c. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE2575
source / vignettesOK277
linux-releaseNOTE2467
macos-releaseNOTE2171
macos-oldrelNOTE2088
windows-develNOTE2877
windows-releaseNOTE2860
windows-oldrelNOTE2964
wasm-releaseOK169

Exports:accumulation_testavg_pairwise_dist_plotdirichlet_ordinationrepeated_rarefactiontest_threshold

Dependencies:abindade4ALDEx2apebackportsBHBiobaseBiocGenericsBiocParallelbiomformatBiostringsbroomclasscliclusterclusterSimcodetoolscpp11crayondata.tableDelayedArraydeldirdigestdirectlabelsdoParalleldplyre1071farverforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableigraphinterpIRangesisobanditeratorsjpegjsonlitelabelinglambda.rlatticelatticeExtralifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmulttestNADAnlmepermutephyloseqpillarpixmappkgconfigplyrpngproxypurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppParallelreshape2RfastrlangS4ArraysS4VectorsS7scalesSeqinfosnowspSparseArraystringistringrSummarizedExperimentsurvivaltibbletidyrtidyselecttruncnormutf8vctrsveganviridisLitewithrXVectorzCompositionszigg