Package: Sibyl 1.0

Sibyl: Sibyl

The Sibyl package provides a convenient way of testing a range of thresholds for rarefation, evaluating the effect of different values on ordination results, integrating with commonly used packages in microbial ecology. You provide phyloseq data with count data and sample information.

Authors:Lorenzo Assentato [aut, cre], Magdalena Polder [aut]

Sibyl_1.0.tar.gz
Sibyl_1.0.zip(r-4.7)Sibyl_1.0.zip(r-4.6)Sibyl_1.0.zip(r-4.5)
Sibyl_1.0.tgz(r-4.6-any)Sibyl_1.0.tgz(r-4.5-any)
Sibyl_1.0.tar.gz(r-4.7-any)Sibyl_1.0.tar.gz(r-4.6-any)
Sibyl_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Sibyl/json (API)

# Install 'Sibyl' in R:
install.packages('Sibyl', repos = c('https://headonpillow.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/headonpillow/sibyl/issues

Pkgdown/docs site:https://headonpillow.github.io

Datasets:

On CRAN:

Conda:

amplicon-sequencingmicrobial-ecologynormalizationrarefaction

2.72 score 2 stars 13 scripts 4 exports 71 dependencies

Last updated from:61c4e15f96. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE1808
source / vignettesOK247
linux-release-x86_64NOTE1843
macos-release-arm64NOTE1398
macos-oldrel-arm64NOTE1317
windows-develNOTE1542
windows-releaseNOTE1992
windows-oldrelNOTE1949
wasm-releaseOK145

Exports:accumulation_testavg_pairwise_dist_plotrepeated_rarefactiontest_threshold

Dependencies:ade4apebackportsBiobaseBiocGenericsbiomformatBiostringsbroomclasscliclusterclusterSimcodetoolscpp11crayondata.tabledigestdoParalleldplyre1071farverforeachgenericsggplot2gluegtableigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmulttestnlmepermutephyloseqpillarpixmappkgconfigplyrproxypurrrR6RColorBrewerRcppRcppArmadilloreshape2rlangS4VectorsS7scalesSeqinfospstringistringrsurvivaltibbletidyrtidyselectutf8vctrsveganviridisLitewithrXVector